Ph: 001838042
Your browser version may not work well with NCBI's Web applications. More information here...

1: SDHD succinate dehydrogenase complex, subunit D, integral membrane protein [ Homo sapiens ]

GeneID: 6392 updated 12-Nov-2008

[Top][Help]Summary

Official Symbol
SDHDprovided by HGNC
Official Full Name
succinate dehydrogenase complex, subunit D, integral membrane proteinprovided by HGNC
Primary source
HGNC:10683
See related
Ensembl:ENSG00000204370; HPRD:04069; MIM:602690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PGL; CBT1; PGL1; SDH4; SDHD
Summary
Complex II of the respiratory chain, which is specifically involved in the oxidation of succinate, carries electrons from FADH to CoQ. The complex is composed of four nuclear-encoded subunits and is localized in the mitochondrial inner membrane. The subunit D protein is one of two integral membrane proteins anchoring the complex to the matrix side of the membrane. Mutations in SDHD have been linked to hereditary paraganglioma. [provided by RefSeq]

[Top][Help]Genomic regions, transcripts, and products

Genomic context[Top][Help]

chromosome: 11; Location: 11q23See SDHD in MapViewer

[image]

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into FunctionWhat's a GeneRIF?

PubMed 1. Observational study of gene-disease association. (HuGE Navigator)
PubMed 2. analysis of germline mutations and variants in the succinate dehydrogenase genes SDHB and SDHD in Cowden and Cowden-like syndromes
PubMed 3. Observational study of gene-disease association. (HuGE Navigator)
PubMed 4. SDHD mutation in sporadic head and neck paraganglioma
PubMed 5. Observational study of gene-disease association. (HuGE Navigator)
PubMed 6. Paraganglioma after maternal transmission of a succinate dehydrogenase gene mutation.
PubMed 7. Observational study of genotype prevalence. (HuGE Navigator)
PubMed 8. Observational study of gene-disease association. (HuGE Navigator)
PubMed 9. Observational study of gene-disease association. (HuGE Navigator)
PubMed 10. Observational study of genotype prevalence. (HuGE Navigator)
PubMed 11. Observational study of gene-disease association. (HuGE Navigator)
PubMed 12. Observational study of gene-disease association. (HuGE Navigator)
PubMed 13. Observational study of gene-disease association. (HuGE Navigator)
PubMed 14. Observational study of genotype prevalence. (HuGE Navigator)
PubMed 15. Observational study of genotype prevalence. (HuGE Navigator)
PubMed 16. investigated 11 patients with the dyad of 'paraganglioma and gastric stromal sarcoma'; in eight, from 7 unrelated families, the GISTs were caused by germline mutations of the genes encoding subunits B, C, or D (the SDHB, SDHC and SDHD genes, respectively)
PubMed 17. Results describe copy number aberrations in the SDHD and MMP12 genes in an affected Solar Keratosis and control cohort.
PubMed 18. study showed SDHD germ-line mutations are rare in patients with pheochromocytoma
PubMed 19. mutation not found in Chinese patients with sporadic pheochromocytoma/paraganglioma
PubMed 20. prevalence of paragangliomas in carriers of D92Y mutations is at least 2.5%.
PubMed 21. familial gastrointestinal stromal tumors may be caused by mutations of the succinate dehydrogenase subunit genes SDHB, SDHC, and SDHD
PubMed 22. Two novel SDH mutations in Japanese pheochromocytomas.
PubMed 23. Prevalence of SDHB, SDHC, and SDHD germline mutations in clinic patients with head and neck paragangliomas
PubMed 24. Loss of chromosome 11 regions, including the deletion of PGL1 and PGL2 loci, may result in a severe phenotype, as exemplified by the development of paraganglioma.
PubMed 25. Pseudo-hypoxia can be observed in SDH-suppressed cells in the absence of oxidative stress and in the presence of effective antioxidant treatment.
PubMed 26. Review. Succinate dehydrogenase catalyses a step in the Krebs tricarboxylic-acid cycle. Inherited heterozygous mutations in the gene encoding this enzyme causes a predisposition to inherited neoplasia syndromes.
PubMed 27. Germ-line mutation in SDHD is associated with parasympathetic paraganglioma
PubMed 28. Alterations of the SDHD gene are involved in the tumorigenesis of both midgut carcinoids and Merkel cell carcinomas.
PubMed 29. Germline mutation on the SDHD gene was present in patients with pheochromocytoma or functional paraganglioma.
PubMed 30. A possible role for SDH polymorphism as susceptibility/disease modifying factors in familial and sporadic medullary thyroid carcinomas was shown.
PubMed 31. The genes most frequently implicated: SDHD and SDHB, also predispose to phaeochromocytoma. SDHD shows a complex inheritance pattern - tumours do not develop if the mutation is inherited from the mother.
PubMed 32. germline mutation in the succinate dehydrogenase subunit D (SDHD) gene
PubMed 33. identification of novel mutations in patients with phaeochromocytoma and/or paraganglioma
PubMed 34. Hereditary paraganglioma due to the SDHD M1I mutation in a second Chinese family: a founder effect.
PubMed 35. SDHD may have a role in colorectal and gastric cancers as a distinct type of tumor suppressor
PubMed 36. R22X mutation of the SDHD gene in hereditary paraganglioma abolishes the enzymatic activity of complex II in the mitochondrial respiratory chain and activates the hypoxia pathway

[Top][Help]General gene information

Markers

RH64925(e-PCR)
Links: UniSTS:49069
Alternate name: stSG8128
A002R25(e-PCR)
Links: UniSTS:56503
Alternate name: RH25025
WI-11979(e-PCR)
Links: UniSTS:80122
Alternate names: EST198329; RH51982
RH80714(e-PCR)
Links: UniSTS:91505
D11S2246E(e-PCR)
Links: UniSTS:151407
Alternate name: GDB:445698

Phenotypes

Carcinoid tumors, intestinal
MIM: 114900
Merkel cell carcinoma, somatic
MIM: 602690
Paraganglioma and gastric stromal sarcoma
MIM: 606864
Paragangliomas, familial nonchromaffin, 1, with or without deafness
MIM: 168000
Pheochromocytoma
MIM: 171300

Pathways

KEGG pathway: Citrate cycle (TCA cycle)
00020
KEGG pathway: Oxidative phosphorylation
00190
Reactome Event:Electron Transport Chain
163200
Reactome Event:Pyruvate metabolism and TCA cycle
71406

Homology

Mouse, Rat
Map Viewer

GeneOntology Provided by GOA

Function Evidence
Process Evidence
tricarboxylic acid cycle
PubMed 9533030
IDA PubMed
Component Evidence
mitochondrial envelope
PubMed 9533030
TAS PubMed
mitochondrion
PubMed 2302193
TAS PubMed

[Top][Help]General protein information

Preferred Names
succinate dehydrogenase complex, subunit D
Names
succinate dehydrogenase complex, subunit D
succinate dehydrogenase ubiquinone cytochrome B small subunit

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

NM_003002.1NP_002993.1 succinate dehydrogenase complex, subunit D precursor

Source sequence(s)
AB006202
Consensus CDS
CCDS31678.1
UniProtKB/TrEMBL
B3KQQ8
UniProtKB/Swiss-Prot
O14521
Conserved Domains (1) summary
cd03496
Location:60158
Blast Score:225
SQR_TypeC_CybS; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric...

RefSeqs of Annotated Genomes: Build 36.3

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_000011.8 Reference assembly

Range
111462832..111471727
Download
GenBank  FASTA Sequence Viewer (beta)

NT_033899.7

Range
15520038..15528933
Download
GenBank  FASTA Sequence Viewer (beta)

Alternate assembly (based on Celera assembly)

Genomic

AC_000054.1 Alternate assembly (based on Celera assembly)

Range
109110814..109119709
Download
GenBank  FASTA Sequence Viewer (beta)

NW_925173.1

Range
21979714..21988609
Download
GenBank  FASTA Sequence Viewer (beta)

Alternate assembly (based on HuRef)

Genomic

AC_000143.1 Alternate assembly (based on HuRef)

Range
107890550..107881655, complement
Download
GenBank  FASTA Sequence Viewer (beta)

NW_001838042.2

Range
8805355..8796460, complement
Download
GenBank  FASTA Sequence Viewer (beta)

[Top][Help]Related Sequences

Nucleotide   Protein
Genomic   AB026906.1   BAA81889.1
Genomic   AP002007.4 (103990..112885)    None
Genomic   CH471065.1   EAW67181.1
    EAW67182.1
    EAW67183.1
mRNA   AB006202.1   BAA22054.1
mRNA   AK075360.1   BAG52120.1
mRNA   BC005263.1   AAH05263.1
mRNA   BC009574.1   AAH09574.1
mRNA   BC012603.1   AAH12603.1
mRNA   BC015188.1   AAH15188.1
mRNA   BC015992.1   AAH15992.1
mRNA   BC022350.1   AAH22350.1
mRNA   BC070307.1   AAH70307.1
mRNA   BC071755.1   AAH71755.1
mRNA   BC071756.1   AAH71756.1
mRNA   BT007238.1   AAP35902.1
mRNA   CR456932.1   CAG33213.1
mRNA   CR617068.1    None
Synthetic   DQ892701.2   ABM83627.1
Synthetic   DQ896292.2   ABM87291.1
Protein Accession   Links
O14521.1   GenPept   UniProtKB/Swiss-Prot
MIM 602690 PharmGKB PA35608 GeneTests for MIM: 602690 HPRD 04069 TCA Cycle Gene Mutation Database (SDHD) TCA Cycle Gene Mutation Database (SDHD) UniGene Hs.356270


You are viewing a mobilized version of this site...
View original page here

How do you rate mobile version of this page?

Mobilized by Mowser Mowser