Ph: 001839245
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1: GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 [ Homo sapiens ]

GeneID: 2902 updated 12-Nov-2008

[Top][Help]Summary

Official Symbol
GRIN1provided by HGNC
Official Full Name
glutamate receptor, ionotropic, N-methyl D-aspartate 1provided by HGNC
Primary source
HGNC:4584
See related
Ensembl:ENSG00000176884; HPRD:15926; MIM:138249
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NR1; NMDA1; NMDAR1; GRIN1
Summary
The protein encoded by this gene is a critical subunit of N-methyl-D-aspartate receptors, members of the glutamate receptor channel superfamily which are heteromeric protein complexes with multiple subunits arranged to form a ligand-gated ion channel. These subunits play a key role in the plasticity of synapses, which is believed to underlie memory and learning. Cell-specific factors are thought to control expression of different isoforms, possibly contributing to the functional diversity of the subunits. Alternatively spliced transcript variants have been described. [provided by RefSeq]

[Top][Help]Genomic regions, transcripts, and products

Genomic context[Top][Help]

chromosome: 9; Location: 9q34.3See GRIN1 in MapViewer

[image]

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into FunctionWhat's a GeneRIF?

PubMed 1. Observational study of gene-disease association. (HuGE Navigator)
PubMed 2. Observational study of gene-disease association. (HuGE Navigator)
PubMed 3. deletion of the C terminus of the mGlu5a receptor abolishes both its interaction with the NMDA receptor and reciprocal inhibition of the receptors
PubMed 4. the synaptic NMDA receptor extracellular signal-regulated kinase activation pathway is coupled to both NR2A and NR2B containing receptors
PubMed 5. Observational study of gene-disease association. (HuGE Navigator)
PubMed 6. Observational study of gene-disease association. (HuGE Navigator)
PubMed 7. Observational study of gene-disease association. (HuGE Navigator)
PubMed 8. Clinical trial of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)
PubMed 9. Observational study of gene-disease association and gene-gene interaction. (HuGE Navigator)
PubMed 10. Observational study of gene-disease association. (HuGE Navigator)
PubMed 11. Observational study of gene-disease association. (HuGE Navigator)
PubMed 12. Observational study of gene-disease association. (HuGE Navigator)
PubMed 13. Observational study of gene-disease association. (HuGE Navigator)
PubMed 14. Observational study of gene-disease association. (HuGE Navigator)
PubMed 15. Observational study of gene-disease association. (HuGE Navigator)
PubMed 16. Observational study of gene-disease association. (HuGE Navigator)
PubMed 17. Observational study of gene-disease association and gene-gene interaction. (HuGE Navigator)
PubMed 18. Observational study of gene-disease association. (HuGE Navigator)
PubMed 19. Significant associations in single-marker and haplotype-based analyses pf variants and schiophrenia with depressive symptoms.
PubMed 20. Alteration of branch site consensus sequence and enhanced pre-mRNA splicing of an NMDAR1 intron not associated with schizophrenia.
PubMed 21. involvement of the GRIN1 in the pathogenesis of bipolar disorder
PubMed 22. Tested the association of two silent polymorphisms, a G/C substitution localized on the 5' UTR and an A/G substitution localized in exon 6, with schizophrenia and found no significant results. Haplotype analyses showed a borderline significant result.
PubMed 23. Increased coassembly of NR1 and NR2B with PSD-95 may underlie one of the cellular mechanisms that contributes to in situ increased hyperexcitability, leading to seizure generation in focal cortical dysplasia.
PubMed 24. Absolute levels of the eight NR1 transcripts by quantitative internally standardized RT-PCR assay were measured; expression was strongly attenuated in susceptible regions of Alzheimer's disease brain
PubMed 25. Variants in NMDAR genes are associated with alcoholism and related traits.
PubMed 26. NR3 nmda receptor subunits induce plasticity in NR1 with respect to subunit assembly and ligand binding/channel coupling that is unique among ligand-gated ion channel subunits.
PubMed 27. A significant decrease in the phosphorylation level at serine 897 (S897) of the NMDA receptor type 1 (NR1) subunit was found in brains from patients with schizophrenia
PubMed 28. the NR1 promoter is positively regulated by NF-kappaB site during neuronal differentiation by interacting with Sp3/Sp1
PubMed 29. SIDS infants had increased mRNA in 6 nuclei of the mid-medulla, while protein was increased in the dorsal motor nucleus of the vagus (p = 0.04) and decreased in the nucleus of the spinal trigeminal tract (p = 0.03).
PubMed 30. human cerebral endothelial cells express the message and protein for NMDA receptors.
PubMed 31. A tendency to a decrease in the density of the NR1 upper band below control values is found in superior temporal cortex of bipolar and depressed patients, but not schizophrenics.
PubMed 32. the three amino acid tail following the TM4 region of the N-methyl-D-aspartate receptor (NR) 2 subunits is sufficient to overcome endoplasmic reticulum retention of NR1-1a subunit
PubMed 33. the rapidly and slowly degrading pools mainly consisted of the NR1 splice variants NR1-4a and NR1-2a. deglycosylation by endoglycosidase H indicated the presence of an immature form of NR1 that was retained in the endoplasmic reticulum.
PubMed 34. the conformation of NR1 subunit homodimers is affected by the partner NR2 subunits during the formation of heteromeric receptor complexes
PubMed 35. These results suggest that NR1 may play a role in carcinogenicity and cell death associated with one-electron reductions.
PubMed 36. arginine 260 is necessary for both tPA-induced cleavage of the ATD of NR1 and tPA-induced potentiation of NMDA receptor signaling
PubMed 37. molecular interaction between PSD-95 and nmda receptors: the effct of the NR1 splice variant on channel gating.
PubMed 38. ApoEr2 can form a multiprotein complex with NMDA receptor subunits and PSD95
PubMed 39. the combined effects of the polymorphisms in the GRIN1 and GRIN2B genes might be involved in the etiology of schizophrenia.
PubMed 40. disulfide bridging and structural integrity within the NR1 N-terminal domain is requisite for cell surface N-methyl-D-aspartate receptor expression
PubMed 41. NMDA receptors are expressed in human epidermis under physiological conditions especially in stratum granulosum. Their reduced expression within parakeratotic epidermis in psoriasis vulgaris may be evidence of impaired intracellular calcium influx.
PubMed 42. Significant reductions were found in relative NMDA receptor binding in left hippocampal medication-free, but not antipsychotic-treated, schizophrenic patients.
PubMed 43. NMDA receptor may play a role in the regulation of keratinocyte growth and differentiation
PubMed 44. Genes for the NMDAR1 subunit is not frequently involved in the development of schizophrenia in the German population.
PubMed 45. These results demonstrate that human T lymphocytes express the NR1 subunit of NMDA receptors, which are functionally active in controlling cell activation.

[Top][Help]HIV-1 protein interactions

Protein    Interaction
1.Envelope surface glycoprotein gp120    HIV-1 gp120 activates NMDA receptor directly and phosphorylates JNK through a gp120-mediated apoptotic pathway in human neuroblastoma cells       PubMed
2.     HIV-1 gp120 binds to cells expressing epsilon1/zeta1 or epsilon2/zeta1 combined NMDA receptor subunits, but not to cells expressing a single epsilon1, epsilon2, or zeta1 NMDA receptor subunit       PubMed
3.     HIV-1 gp120 causes an activation of phospholipase A2, resulting in the increased release of arachidonic acid, which may sensitize the NMDA receptor       PubMed
4.     HIV-1 gp120-mediated human cell death involves the NMDA receptor complex; antagonists of the NMDA receptor reverse the gp120-mediated effects       PubMed
5.Tat    HIV-1 Tat induces apoptosis of neurons and neurotoxicity through the activation of both NMDA and non-NMDA receptors       PubMed
6.     HIV-1 Tat upregulates expression of NMDA receptor 1 in mixed cultures of human neurons and astrocytes       PubMed

Go to the HIV-1, Human Protein Interaction Database


[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
 
  NP_015566.1   NP_001094.1   ACTN2     HPRD   PubMed
alpha-actinin-2 interacts with NR1A. This interaction was modeled on a demonstrated interaction between human alpha-actinin-2 and NR1A from an unspecified species.
  NP_015566.1   NP_001094.1   ACTN2     BIND   PubMed
 
  NP_015566.1   NP_671700.1   AKAP9     HPRD   PubMed
 
  NP_015566.1   NP_671700.1   AKAP9     HPRD   PubMed
 
  NP_015566.1   CaMK II alpha subunit   CAMK2A     HPRD   PubMed
 
  NP_015566.1   Calnexin   CANX     HPRD   PubMed
 
  NP_015566.1   Cadherin 2   CDH2     HPRD   PubMed
 
  NP_015566.1   Citron   CIT     HPRD   PubMed
 
  NP_015566.1   Clathrin, heavy polypeptide   CLTC     HPRD   PubMed
 
  NP_015566.1   Catenin beta   CTNNB1     HPRD   PubMed
 
  NP_015566.1   Channel associated protein of synapse 110   DLG2     HPRD   PubMed
 
  NP_015566.1   Synapse associated protein 102   DLG3     HPRD   PubMed
 
  NP_015566.1   Synapse associated protein 90   DLG4     HPRD   PubMed
 
  NP_015566.1   Discs large associated protein 4   DLGAP4     HPRD   PubMed
 
  NP_015566.1   Dynamin 1   DNM1     HPRD   PubMed
 
  NP_015566.1   Dopamine receptor D1   DRD1     HPRD   PubMed
 
  NP_015566.1   Dual specificity phosphatase 4   DUSP4     HPRD   PubMed
 
  NP_015566.1   EphB2   EPHB2     HPRD   PubMed
 
  NP_015566.1   EphB4   EPHB4     HPRD   PubMed
 
  NP_015566.1   FUS   FUS     HPRD   PubMed
 
  NP_015566.1   N-methyl D-aspartate receptor subunit 2A   GRIN2A     HPRD   PubMed
NR1a interacts with NR2A.
  NP_015566.1   NP_000824.1   GRIN2A     BIND   PubMed
 
  NP_015566.1   NP_000825.1   GRIN2B     HPRD   PubMed
 
  NP_015566.1   NP_000827.1   GRIN2D     HPRD   PubMed
 
  NP_015566.1   NP_597702.1   GRIN3A     HPRD   PubMed
 
  NP_015566.1   Heterogeneous nuclear ribonucleoprotein U   HNRNPU     HPRD   PubMed
 
  NP_015566.1   H-Ras   HRAS     HPRD   PubMed
 
  NP_015566.1   Heat shock 70 KD protein 1A   HSPA1A     HPRD   PubMed
 
  NP_015566.1   Internexin, alpha   INA     HPRD   PubMed
 
  NP_015566.1   HIV 1 Tat interacting protein   KAT5     HPRD   PubMed
 
  NP_015566.1   Microtubule associated protein 2   MAP2     HPRD   PubMed
 
  NP_015566.1   MAP2K2   MAP2K2     HPRD   PubMed
 
  NP_015566.1   Myosin heavy chain 9, nonmuscle   MYH9     HPRD   PubMed
 
  NP_015566.1   Nanos homolog 1   NANOS1     HPRD   PubMed
 
  NP_015566.1   Neurofilament light polypeptide   NEFL     HPRD   PubMed
 
  NP_015566.1   AAA59925.1   NF1     HPRD   PubMed
 
  NP_015566.1   NP_000921.1   PLAT     HPRD   PubMed
 
  NP_015566.1   Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A, alpha isoform   PPP2R1A     HPRD   PubMed
 
  NP_015566.1   Protein phosphatase 2 regulatory subunit B alpha   PPP2R2A     HPRD   PubMed
 
  NP_015566.1   Protein kinase C, beta 1   PRKCB     HPRD   PubMed
 
  NP_015566.1   Protein kinase C epsilon   PRKCE     HPRD   PubMed
 
  NP_015566.1   Protein kinase C, gamma   PRKCG     HPRD   PubMed
 
  NP_015566.1   Ras related protein 2A   RAP2A     HPRD   PubMed
 
  NP_015566.1   Ribosomal protein S6 kinase alpha 3   RPS6KA3     HPRD   PubMed
 
  NP_015566.1   Transcription factor Sp1   SP1     HPRD   PubMed
 
  NP_015566.1   Transcription factor Sp3   SP3     HPRD   PubMed
 
  NP_015566.1   Spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)   SPTAN1     HPRD   PubMed
 
  NP_015566.1   Synaptic Ras GTPase activating protein 1   SYNGAP1     HPRD   PubMed
 
  NP_015566.1   Tight junction protein 1   TJP1     HPRD   PubMed
 
  NP_015566.1   TRAF3   TRAF3     HPRD   PubMed
 
  NP_015566.1   Tubulin, alpha 4   TUBA4B     HPRD   PubMed
 
  NP_015566.1   Calmodulin       HPRD   PubMed
Co-fractionation
  BioGRID:109159   BioGRID:115648   CACNG2     BioGRID   PubMed
Affinity Capture-Western
  BioGRID:109159   BioGRID:125509   GRIN3B     BioGRID   PubMed
Affinity Capture-Western
  BioGRID:109159   BioGRID:110632   ND2     BioGRID   PubMed
Tiam1 interacts with NMDA subunit NR1. This interaction was modelled on a demonstrated interaction between human Tiam1 and NR1 from an unspecified species.
  NP_003244.1   TIAM1     BIND   PubMed

[Top][Help]General gene information

Markers

Grin1(e-PCR)
Links: UniSTS:143260
GDB:451867(e-PCR)
Links: UniSTS:157385

Pathways

KEGG pathway: Calcium signaling pathway
04020
KEGG pathway: Long-term potentiation
04720
KEGG pathway: Neuroactive ligand-receptor interaction
04080

Homology

Mouse, Rat
Map Viewer

GeneOntology Provided by GOA

[Top][Help]General protein information

Preferred Names
NMDA receptor 1
Names
NMDA receptor 1
OTTHUMP00000022678
glutamate [NMDA] receptor subunit zeta 1
N-methyl-D-aspartate receptor channel, subunit zeta-1

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

NM_000832.5NP_000823.4 NMDA receptor 1 isoform NR1-1 precursor

Description
Transcript Variant: This variant (NR1-1) lacks an alternate in-frame exon and uses an alternate splice site in the 3' coding region, compared to variant NR1-3. The resulting protein (isoform NR1-1) is shorter and has a different C-terminus, compared to isoform NR1-3.
Source sequence(s)
AL929554,L13266
Consensus CDS
CCDS43910.1
UniProtKB/Swiss-Prot
Q05586
UniProtKB/TrEMBL
Q5VSF3

NM_007327.2NP_015566.1 NMDA receptor 1 isoform NR1-3 precursor

Description
Transcript Variant: This variant (NR1-3) represents the longest transcript and encodes the longest protein (isoform NR1-3).
Source sequence(s)
AL929554,D13515
Consensus CDS
CCDS7031.1
UniProtKB/Swiss-Prot
Q05586

NM_021569.2NP_067544.1 NMDA receptor 1 isoform NR1-2 precursor

Description
Transcript Variant: This variant (NR1-2) lacks an alternate in-frame exon in the 3' coding region, compared to variant NR1-3, resulting in a shorter protein (isoform NR1-2), compared to isoform NR1-3.
Source sequence(s)
AL929554,D13515,L13267
Consensus CDS
CCDS7032.1
UniProtKB/Swiss-Prot
Q05586
UniProtKB/TrEMBL
Q5VSF6
Conserved Domains (4) summary
cd00134
Location:457552
Blast Score:147
PBPb; Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...
pfam00060
Location:559834
Blast Score:679
Lig_chan; Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
cd06379
Location:8383
Blast Score:1734
PBP1_iGluR_NMDA_NR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential ch